Feb 28 2022
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bamtools
a fast, flexible C++ API & toolkit for reading, writing, and manipulating BAM files.
Updated versions:
2.5.2 | Linux 64
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Feb 27 2022
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C3POa
(Concatemeric Consensus Caller with Partial Order alignments) is a computational pipeline for calling consensi on R2C2 nanopore data.
Updated versions:
5431d3b | Linux 64
5431d3b | OS X INTEL
2.3.0 | OS X INTEL
2.3.0 | Linux 64
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Feb 25 2022
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SAMtools
(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.
Updated versions:
1.15 | OS X INTEL
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Feb 24 2022
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CEFCIG
CEFCIG (Computational Epigenetic Framework for Cell Identity Gene Discovery)
Updated versions:
5431d3b | Linux 64
5431d3b | OS X INTEL
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Feb 16 2022
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GATK
(Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any size with a primary focus on variant discovery, genotyping, and data quality assurance.
Updated versions:
4.2.5.0 | Linux 64
4.2.5.0 | OS X INTEL
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Feb 15 2022
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HDF5
s a data model, library, and file format for storing and managing data.
Updated versions:
1.8.15 | OS X INTEL
1.12.1 | OS X INTEL
1.12.1 | Linux 64
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Feb 14 2022
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xPore
is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing
Updated versions:
2.1 | OS X INTEL
2.1 | Linux 64
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Feb 08 2022
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OpenJDK
(Open Java Development Kit) a free and open source implementation of the Java Platform, Standard Edition (Java SE).
Updated versions:
zulu11.54.23-ca-jdk11.0.14-linux_x64 | Linux 64
zulu11.54.23-ca-jdk11.0.14-macosx_x64 | OS X INTEL
zulu7.38.0.11-ca-jdk7.0.262-macosx_x64 | OS X INTEL
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Feb 08 2022
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Cytoscape
a software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.
Updated versions:
3.9.1 | Linux 64
3.9.1 | OS X INTEL
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Feb 07 2022
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FlashPCA
performs fast principal component analysis (PCA) of single nucleotide polymorphism (SNP) data, similar to smartpca from EIGENSOFT (http://www.hsph.harvard.edu/alkes-price/software/) and shellfish (https://github.com/dandavison/shellfish). FlashPCA is based on the https://github.com/yixuan/spectra/ library.
Updated versions:
2.0 | OS X INTEL
2.0 | Linux 64
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Feb 07 2022
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HiCPro
An optimized and flexible pipeline for Hi-C data processing
Updated versions:
3.1.0 | Linux 64
3.1.0 | OS X INTEL
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Feb 04 2022
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
11.5.2 | Linux 64
11.5 | Linux 64
11.4 | Linux 64
11.3.1 | Linux 64
11.3 | Linux 64
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Feb 03 2022
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SEACR
Sparse Enrichment Analysis for CUT&RUN
Updated versions:
1.3 | Linux 64
1.3 | OS X INTEL
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Feb 01 2022
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SUPPA2
Fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions.
Updated versions:
2.3 | Linux 64
2.3 | OS X INTEL
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