Supported Applications


  • Description

    a software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.

  • Usage Notes

    Cytoscape runs in a read-only directory (/programs). As such you may receive a warning message:

    Unable to update instance pid: Unable to create directory /nfs/programs/x86_64-linux/cytoscape/3.7.1/framework/instances

    This is harmless and can be ignored.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cytoscape Copy to clipboard
  • Primary Citation*

    P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker. 2003. Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Genome Research. Cold Spring Harbor Laboratory Press. 13(11): 2498-2504.

    • *Full citation information available through