• BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

Recent Software Updates

May 13 | pySCENIC

is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables bi… >>

May 11 | scDRS

(single-cell disease-relevance score) is a method for associating individual cells in scRNA-seq data with disease GWASs, built on top of An… >>

May 09 | Cell Ranger ATAC

a set of analysis pipelines that perform identification of open chromatin regions, motif annotation, and differential accessibility analysi… >>

May 09 | cellranger-arc

The set of analysis pipelines in this suite perform sample demultiplexing, barcode processing, identification of open chromatin regions, an… >>

May 09 | Cell Ranger

a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform … >>

May 04 | R

a free software environment for statistical computing and graphics. >>

Apr 25 | Nextflow

a reactive workflow framework and programming DSL that ease writing computational pipelines with complex data. It is designed around the i… >>

Latest news

SBGrid/Harvard Shield

BioGrids Technology Breakfasts

Join us once monthly for our BioGrids Technology Breakfast. Fridays at 9:30am on Zoom, we'll hear about research computing tools and services available to the Harvard community, get updates from …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …