• BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

Recent Software Updates

Feb 27 | TPMCalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files. The input parameters are the same GTF files us... >>

Feb 27 | bamtools

a fast, flexible C++ API & toolkit for reading, writing, and manipulating BAM files. >>

Feb 24 | GATK

(Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any si... >>

Feb 21 | TPMCalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files. The input parameters are the same GTF files us... >>

Feb 18 | CUDA

redistributable software libraries to support CUDA applications for Linux. >>

Feb 17 | Anaconda

a Python distribution that includes more than 400 of the most popular Python packages for science, math, engineering, and data analysis. >>

Feb 10 | phaser

Performs haplotype phasing using read alignments in BAM format from both DNA and RNA based assays, and provides measures of haplotypic ex... >>

Latest news

SBGrid/Harvard Shield

BioGrids Workshop Series

Join us for a series of hands-on workshops featuring scientists and contributing developers demonstrating software tools and techniques and offering an opportunity to ask questions directly relevant to your research. ...

SBGrid/Harvard Shield

BioGrids Technology Breakfasts

Join us once monthly for our BioGrids Technology Breakfast where we'll hear about research computing tools and services available to the Harvard community and get updates from a variety of ...

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the ...

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