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  • BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

SBGrid Consortium homepage

Recent Software Updates

Software updates
Oct 04 | tidk

Identify and find telomeres, or telomeric repeats in a genome. >>

Oct 03 | LongReadSum

LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text for… >>

Oct 04 | LazyPredict

Lazy Predict helps build a lot of basic models without much code and helps understand which models works better without any parameter tunin… >>

Oct 02 | smoothxg

Local reconstruction of variation graphs using partial order alignment. Pangenome graphs built from raw sets of alignments may have comple… >>

Oct 02 | falco

is a drop-in C++ implementation of FastQC to assess the quality of sequence reads. >>

Oct 02 | Recentrifuge

Robust comparative analysis and contamination removal for metagenomics >>

Oct 02 | epic2

Ultraperformant Chip-Seq broad domain finder based on SICER. >>

Oct 02 | hifiasm_meta

Metagenome assembler for Hifi reads, based on hifiasm. >>

Oct 02 | panacus

panacus is a counting tool for pangenome graphs. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., node… >>

Oct 02 | gappa

Genesis Applications for Phylogenetic Placement Analysis >>

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Latest upgrades from SBGrid, including latest software updates, new members and special events. Published montly by SBGrid.

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SBGrid Capsules Technology

We have recently published a manuscript describing our Capsules technology used to deploy SBGrid and BioGrids software collections. Read more in Acta Cryst Section D, special 75th ICUR anniversary issue, …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …

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