• BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

Recent Software Updates

Aug 04 | popscle

is a suite of population scale analysis tools for single-cell genomics data. >>

Aug 02 | pLannotate

is web server for automatically annotating engineered plasmids. >>

Jul 24 | demuxlet

Genetic multiplexing of barcoded single cell RNA-seq. >>

Jul 19 | Cutadapt

finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. >>

Jul 18 | UPIMAPI

(UniProt Id Mapping through API) a command line interface for using UniProt's API, which allows access to UniProt's ID mapping programmatic… >>

Jul 18 | hichipper

is an open-source command-line toolkit that performs restriction fragment bias-aware preprocessing of HiChIP data. >>

Jul 13 | clustalo

is the latest version of Clustal: a multiple sequence alignment program for DNA or proteins. >>

Latest news

SBGrid/Harvard Shield

BioGrids Technology Breakfasts

Join us once monthly for our BioGrids Technology Breakfast. Fridays at 9:30am on Zoom, we'll hear about research computing tools and services available to the Harvard community, get updates from …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …