(RNA-Seq by Expectation-Maximization) a software package for estimating gene and isoform expression levels from RNA-Seq data.

an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

an open source software library for high performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices. Originally developed by researchers and engineers from the Google Brain team within Google’s AI organization, it comes with strong support for machine learning and deep learning, and the flexible numerical computation core is used across many other scientific domains.

implements a versatile high-performance version of the BPP software

is a software package for Bayesian tree inference.

is a phylogenetic penalized likelihood program.

efficient and versatile phylogenomic software by maximum likelihood.