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  • BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

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Recent Software Updates

Software updates
Jul 19 | Connectome Workbench

is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human … >>

Jul 16 | SQLite

SQLite is a C-language library that implements a small, fast, self-contained, high-reliability, full-featured, SQL database engine. >>

Jul 16 | pySCENIC

is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables bi… >>

Jul 12 | ParaView

is the world’s leading open source post-processing visualization engine. >>

Jul 10 | Cell Ranger

a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform … >>

Jul 08 | Metaphor

Metagenomic Pipeline for Short Reads >>

Jun 28 | delly

an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversion… >>

Jun 27 | metagenome-atlas

ATLAS - Three commands to start analysing your metagenome data >>

Jun 27 | perbase

Per-base metrics on BAM/CRAM files. >>

Jun 21 | Roary

Takes annotated assemblies in GFF3 format and calculates the pan genome. >>

Latest news

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Latest upgrades from SBGrid, including latest software updates, new members and special events. Published montly by SBGrid.

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BioGrids Technology Breakfasts

Join us once monthly for our BioGrids Technology Breakfast. Fridays at 9:30am on Zoom, we'll hear about research computing tools and services available to the Harvard community, get updates from …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

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Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …

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BioGrids Privacy Policy

BIOGRIDS PRIVACY POLICY The following discloses the information gathering and dissemination practices for BioGrids through this website: https://biogrids.org/, and in connection with the related software support system. “BioGrids” is the …