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an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux.

a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.

Installation Client for the BioGrids software collection.

is an open-source Python toolbox designed for high-performance, markerless pose estimation of animals and objects using deep learning. By leveraging transfer learning, the software allows researchers to achieve human-level tracking accuracy with remarkably little training data—typically only 50 to 200 manually labeled frames. It features a user-friendly graphical interface (GUI) and support for both 2D and 3D tracking across various species and behaviors, making it a standard tool in fields like neuroscience, ethology, and biomechanics.

a set of tools and libraries for interacting with Google Cloud products and services.

is a joint structural variant (SV) and copy number variant (CNV) caller for mapped HiFi sequencing reads. It discovers germline structural variants from local sequence assembly and jointly genotypes these variants across multiple samples. Sawfish additionally applies copy number segmentation on each sample's sequencing coverage levels, synchronizing structural variant breakpoints with copy number change boundaries in the process to improve classification of breakpoint-based structural variant calls, in addition to calling copy number variants.