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  • BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE and Acta Cryst.

  • Personal Installation Manager: a bioinfomatics app store; users install preferred applications/versions on laptops or personal workstations, with graphical or CLI interfaces for Mac or Linux. More details.

  • Capsules isolate the software runtime environment, encapsulating executables, libraries, and version-specific dependencies to provide conflict-free, zero-configuration access to structural biology software. Learn more.

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Recent Software Updates

Software updates
May 19 | kb-python

kb-python is a python package for processing single-cell RNA-sequencing. It wraps the kallisto | bustools single-cell RNA-seq command line … >>

May 19 | repaq

A tool to compress FASTQ files with ultra-high compression ratio and high speed. repaq supports compressing the FASTQ to .rfq or .rfq.xz fo… >>

May 19 | dysgu

dysgu (pronounced duss-key) is a set of command line tools and python-API, for calling structural variants using paired-end or long read se… >>

May 19 | bamtools

a fast, flexible C++ API & toolkit for reading, writing, and manipulating BAM files. >>

May 15 | VCFtools

a program package designed to provide easily accessible methods for working with complex genetic variation data in the form of VCF files, s… >>

May 15 | antiSMASH

antiSMASH (antibiotics and Secondary Metabolite Analysis SHell) allows the rapid genome-wide identification, annotation and analysis of sec… >>

May 13 | BISCUIT

a utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data. It was written to perform alignment, DNA methy… >>

May 13 | SVDSS

a method for structural variations discovery from accurate long reads (e.g PacBio HiFi), based on the notion of sample-specific strings (SF… >>

May 13 | BioPhi

an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) an… >>

May 13 | BWA

(Burrows-Wheeler Aligner) a software package for mapping low-divergent sequences against a large reference genome, such as the human genome… >>

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Latest upgrades from SBGrid, including latest software updates, new members and special events. Published montly by SBGrid.

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Capsules Technology

We have recently published a manuscript describing our Capsules technology used to deploy SBGrid and BioGrids software collections. Read more in Acta Cryst Section D, special 75th ICUR anniversary issue, …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

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Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …

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