• BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE.

  • A segmented purkinje cell (turquoise) extends collaterals, forming synapses (gold/red) in the cerebellum, from the HMS Image and Data Analysis Core. Learn more.

  • HMS's Drosophila RNAi Screening Center (DRSC) is building a comprehensive Drosophila insulin signaling network (InsulinNet).

Recent Software Updates

Jan 31 | HD-BET

Automated brain extraction of multi-sequence MRI using artificial neural networks. >>

Jan 31 | gdcm

Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. >>

Jan 31 | igvtools

command line tools for IGV >>

Jan 30 | p7zip

p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip, see www.7-zip.org ) for Unix. >>

Jan 25 | plastid

Plastid is a Python library designed specifically for nucleotide-resolution analysis of genomics and NGS data. >>

Jan 24 | Cell Ranger

a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform … >>

Jan 24 | ASCIIGenome

a command-line genome browser running from terminal window and solely based on ASCII characters. >>

Latest news

SBGrid/Harvard Shield

BioGrids Technology Breakfasts

Join us once monthly for our BioGrids Technology Breakfast. Fridays at 9:30am on Zoom, we'll hear about research computing tools and services available to the Harvard community, get updates from …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …