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a free software environment for statistical computing and graphics.

a general-purpose, interpreted, object oriented, high-level dynamic programming language that emphasizes code readability. Its syntax allows programmers to express concepts in fewer lines of code than in C++ or Java, thus allowing programmers to work more quickly and integrate their systems more effectively.

PlantSeg is a tool for 3D and 2D segmentation.

a software package to estimate haplotypes in large genotype datasets (WGS and SNP array).

is a quality control and processing pipeline for High Throughput Sequencing data.

a command-line tool from PDBe EMBL-EBI for generating images of macromolecular structures from mmCIF or binary CIF structure files based on Mol*.

a Python-based command line tool for analysis of whole genome sequencing data for gene-editing verification. It performs insertion site detection, copy number variation (CNV) analysis through CNVPytor, bacterial contamination detection through KRAKEN2 and BRACKEN, and variant calling and filtering aided by SnpEff and SnpSift.

OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting.

A tool for mapping and performing quality control on Hi-C data

OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads.