Supported Applications
GATK
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Description
(Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any size with a primary focus on variant discovery, genotyping, and data quality assurance.
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install gatk -
Primary Citation*
A. McKenna, M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M. DePristo.. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. GENOME RESEARCH. 20(9): 1297.
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*Full citation information available through
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Citation Note
The ideal way to cite the GATK is to use all as a triple citation.
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Keywords
DNA-Sequencing, Germline SNP Detection, High-throughput sequencing, RNA-Sequencing, WGS Analysis
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Default Versions
Linux 64: 4.1.4.1
OS X INTEL: 4.1.4.1 -
Other Versions
Linux 64:
4.1.7.0, 4.1.1.0, 4.0.1.1, 3.8.1.0, 3.4-46, 3.1-1 -
OS X INTEL:
4.1.7.0, 4.1.1.0, 4.0.1.1, 3.8.1.0