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Supported Applications

GATK

  • Description

    (Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any size with a primary focus on variant discovery, genotyping, and data quality assurance.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gatk Copy to clipboard

  • Primary Citation*

    A. McKenna, M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M. DePristo.. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. GENOME RESEARCH. 20(9): 1297.


    • *Full citation information available through

  • Citation Note

    The ideal way to cite the GATK is to use all as a triple citation.

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