Supported Applications


  • Description

    performs fast principal component analysis (PCA) of single nucleotide polymorphism (SNP) data, similar to smartpca from EIGENSOFT ( and shellfish ( FlashPCA is based on the library.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install flashpca Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    G. Abraham, Y. Qiu, and M. Inouye. 2017. FlashPCA2: principal component analysis of Biobank-scale genotype datasets. Bioinformatics (Oxford, England). 33(17): 2776-2778.

    • *Full citation information available through

  • Citation Note

    Please cite:

    G. Abraham, Y. Qiu, and M. Inouye, ``FlashPCA2: principal component analysis of biobank-scale genotype datasets'', (2017) Bioinformatics 33(17): 2776-2778. doi:10.1093/bioinformatics/btx299 (bioRxiv preprint

  • Keywords

    Variant Analysis

  • Default Versions

    Linux 64:  2.0 (4.2 MB)
    OS X INTEL:  2.0 (1.2 MB)