Jan 28 2021
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Python
a general-purpose, interpreted, object oriented, high-level dynamic programming language that emphasizes code readability. Its syntax allows programmers to express concepts in fewer lines of code than in C++ or Java, thus allowing programmers to work more quickly and integrate their systems more effectively.
Updated versions:
3.6.5 | Linux 64
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Jan 28 2021
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scvi-tools
(single-cell variational inference tools) is a package for end-to-end analysis of single-cell omics data.
Updated versions:
0.8.1 | Linux 64
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Jan 28 2021
|
Python
a general-purpose, interpreted, object oriented, high-level dynamic programming language that emphasizes code readability. Its syntax allows programmers to express concepts in fewer lines of code than in C++ or Java, thus allowing programmers to work more quickly and integrate their systems more effectively.
Updated versions:
3.6.5 | OS X INTEL
|
Jan 28 2021
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Google Cloud SDK
tools and libraries for interacting with Google Cloud products and services.
Updated versions:
316.0.0 | OS X INTEL
316.0.0 | Linux 64
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Jan 26 2021
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emacs
An extensible, customizable, free/libre text editor.
Updated versions:
26.3 | OS X INTEL
26.3 | Linux 64
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Jan 25 2021
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R-pkgs-Biogrids
contains common and requested R packages for BIOGRIDS. This title is dependent on R.
Updated versions:
r3.6.2-20210125 | Linux 64
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Jan 22 2021
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MAFFT
a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences).
Updated versions:
7.475 | Linux 64
7.475 | OS X INTEL
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Jan 20 2021
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Julia
The Julia programming language is a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.
Updated versions:
1.4.2 | Linux 64
1.3.1 | Linux 64
1.4.2 | OS X INTEL
1.3.1 | OS X INTEL
1.5.3 | Linux 64
1.5.3 | OS X INTEL
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Jan 20 2021
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scvi-tools
(single-cell variational inference tools) is a package for end-to-end analysis of single-cell omics data.
Updated versions:
0.7.0-beta.0 | OS X INTEL
0.7.0-beta.0 | Linux 64
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Jan 20 2021
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Tombo
a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data.
Updated versions:
1.5.1 | Linux 64
1.5.1 | OS X INTEL
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Jan 19 2021
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IGV
(Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
Updated versions:
2.8.13 | Linux 64
2.8.13 | OS X INTEL
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Jan 13 2021
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DosageConvertor
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4 to other formats such as MaCH or PLINK.
Updated versions:
1.0.4 | OS X INTEL
1.0.4 | Linux 64
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Jan 13 2021
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Cell Ranger
a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.
Updated versions:
2.1.1 | Linux 64
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Jan 12 2021
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NanoPack
a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences.
Updated versions:
1.1.1 | Linux 64
1.1.1 | OS X INTEL
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Jan 11 2021
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Sniffles
a structural variation caller using third generation sequencing.
Updated versions:
1.0.12b | Linux 64
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Jan 05 2021
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R-pkgs-Biogrids
contains common and requested R packages for BIOGRIDS. This title is dependent on R.
Updated versions:
r3.6.2-20210101 | Linux 64
|