Supported Applications

C3POa

  • Description

    (Concatemeric Consensus Caller with Partial Order alignments) is a computational pipeline for calling consensi on R2C2 nanopore data.

  • Usage Notes

    BioGrids C3POa provides the following callable executables:

    C3POa_postprocessing.py

    python.c3poa

    C3POa.py

    racon

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install c3poa Copy to clipboard
  • Primary Citation*

    R. Volden, T. Palmer, A. Byrne, C. Cole, R. J. Schmitz, R. E. Green, and C. Vollmers. 2018. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA. Proceedings of the National Academy of Sciences of the United States of America. 115(39): 9726-9731.


    • *Full citation information available through

  • Keywords

    Nanopore

  • Default Versions

    Linux 64:  2.3.0
    OS X INTEL:  2.3.0

  • Other Versions

      Linux 64:

      5431d3b
    • OS X INTEL:

      5431d3b
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