Jan 31 2023
|
gdcm
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP.
Updated versions:
3.0.21 | Linux 64
3.0.21 | OS X INTEL
|
Jan 31 2023
|
igvtools
command line tools for IGV
Updated versions:
2.16.0 | OS X INTEL
2.16.0 | Linux 64
|
Jan 30 2023
|
p7zip
p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip, see www.7-zip.org ) for Unix.
Updated versions:
16.02 | Linux 64
16.02 | OS X INTEL
|
Jan 25 2023
|
plastid
Plastid is a Python library designed specifically for nucleotide-resolution analysis of genomics and NGS data.
Updated versions:
0.6.1 | OS X INTEL
0.6.1 | Linux 64
|
Jan 24 2023
|
ASCIIGenome
a command-line genome browser running from terminal window and solely based on ASCII characters.
Updated versions:
1.17.0 | Linux 64
1.16.0 | Linux 64
1.17.0 | OS X INTEL
1.16.0 | OS X INTEL
|
Jan 23 2023
|
DCMTK
DCMTK is a collection of libraries and applications implementing large parts the DICOM standard.
Updated versions:
3.6.7 | Linux 64
3.6.7 | OS X INTEL
|
Jan 17 2023
|
Wally
Plotting of aligned sequencing reads, assembled contigs or pan-genome graphs in BAM/CRAM/GFA format and visualization of genomic variants.
Updated versions:
0.5.8 | Linux 64
0.5.8 | OS X INTEL
|
Jan 17 2023
|
prodigal-gv
A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes.
Updated versions:
2.10.0 | OS X INTEL
2.10.0 | Linux 64
|
Jan 17 2023
|
gfastats
gfastats is a single fast and exhaustive tool for summary statistics and simultaneous fa (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion. It has been tested in genomes even >100Gbp.
Updated versions:
1.3.6 | OS X INTEL
1.3.6 | Linux 64
|
Jan 15 2023
|
MDAnalysis
an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats. It can write most of these formats, too, together with atom selections suitable for visualization or native analysis tools.
Updated versions:
2.4.2 | OS X INTEL
|
Jan 15 2023
|
AlphaFold
an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.
Updated versions:
2.3.1 | Linux 64
|
Jan 10 2023
|
chopper
Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file.
Updated versions:
0.2.0 | OS X INTEL
0.2.0 | Linux 64
|
Jan 03 2023
|
AmberTools
a suite of programs that allows users to carry out molecular dynamics simulations, particularly on biomolecules. The suite can be used to carry out complete (non-periodic) molecular dynamics simulations (using NAB) with either explicit water or generalized Born solvent models. The independently developed packages work well by themselves, and with Amber itself.
Updated versions:
22 | Linux 64
22 | OS X INTEL
|