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plastid

  • Description

    Plastid is a Python library designed specifically for nucleotide-resolution analysis of genomics and NGS data.

  • Usage

    To list all executables provided by plastid, run: $ biogrids-list plastid Copy to clipboard

  • Usage Notes

    plastid inBioGrids provides the following callable programs:

    counts_in_region

    crossmap

    cs

    findjuncs

    get_count_vectors

    gff_parent_types

    make_wiggle

    metagene

    phase_by_size

    psite

    reformat_transcripts

    slidejuncs

    test_table_equality

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install plastid Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. G. Dunn and J. S. Weissman. 2016. Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data. BMC genomics. 17(1): 958.


    • *Full citation information available through

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