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  • Description

    gfastats is a single fast and exhaustive tool for summary statistics and simultaneous fa (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion. It has been tested in genomes even >100Gbp.

  • Usage

    To list all executables provided by gfastats, run: $ biogrids-list gfastats Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gfastats Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    G. Formenti, L. Abueg, A. Brajuka, N. Brajuka, C. Gallardo-Alba, A. Giani, O. Fedrigo, and E. D. Jarvis. 2022. Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs. Bioinformatics (Oxford, England). 38(17): 4214-4216.

    • *Full citation information available through

  • Keywords

    Genome Assembly

  • Default Versions

    Linux 64:  1.3.6 (28.9 MB)
    OS X INTEL:  1.3.6 (7.3 MB)