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Supported Applications

chopper

  • Description

    Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file.

  • Usage

    To list all executables provided by chopper, run: $ biogrids-list chopper Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install chopper Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    W. D. Coster, S. D'Hert, D. T. Schultz, M. Cruts, and C. V. Broeckhoven. 2018. NanoPack: visualizing and processing long-read sequencing data. Bioinformatics (Oxford, England). 34(15): 2666-2669.


    • *Full citation information available through

  • Keywords

    Read Quality Control

  • Default Versions

    Linux 64:  0.2.0 (633.7 MB)
    OS X INTEL:  0.2.0 (232.9 MB)

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