(Analysis of Functional NeuroImages) is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity.

Keywords:

Image-Analysis Libraries

Visualization

a software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.

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Figure Creation

Visualization

Visualization

Bioinformatics Infrastructure

Miscellaneous

a free tool offered by Golden Helix that delivers stunning visualizations of your genomic data, enabling you to see what is occurring at each base pair in your samples.

Keywords:

Visualization

Genome Visualization

Genomics

(Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.

Keywords:

Genomics

ChIP-Sequencing

Visualization

Genome Annotation

Visualization

DNA-Sequencing

Genome Visualization

is a cross-platform NIfTI format image viewer. It can load multiple layers of images, generate volume renderings and draw volumes of interest. It also provides dcm2nii for converting DICOM images to NIfTI format and NPM for statistics. MRIcron is a mature and useful tool, however you may want to consider the more recent MRIcroGL as an alternative.

Keywords:

Image-Analysis Libraries

Visualization

provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses.

open source version of the widely used molecular visualization package developed by Warren DeLano.

Keywords:

Visualization

Visualization

a Bioconductor software package installed in R 3.2.2 that takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo.

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Bioconductor Packages

Visualization

Visualization

Genome Annotation

Genomics

Motif Comparison

provides analysis and publication quality printing of linear and circular RNA splicing, expression and regulation.

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Visualization

RNA-Sequencing

Genomics

Visualization

Software Introduction SPM is made freely available to the [neuro]imaging community, to promote collaboration and a common analysis scheme across laboratories. The software represents the implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. The SPM software is a suite of MATLAB (MathWorks) functions and subroutines with some externally compiled C routines. SPM was written to organise and interpret …

Keywords:

Image-Analysis Libraries

Visualization

command line tools for sequence logo generation.

Keywords:

Genomics

Comparative Genomics

Visualization

Other

Sequence Logo Generation