Supported Applications
AppCiter will help you create a bibliography of the programs you wish to cite. See How.
AppCiter Programs:
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How to use AppCiter?
AppCiter will help you create a bibliography of the programs you wish to cite.
1. Choose Your Programs
Use the button in the Name column to choose your programs. Proceed to Step 2 to view available citations.
2. Select Citations
Select citations from a custom list. Proceed to Step 3 to download.
3. Export Citations
Export citations or send them to your email.
CloseResults:
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AMPS
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(Alignment of Multiple Protein Sequences) a suite of programs for protein multiple sequence alignment, pairwise alignment, statistical analysis and flexible pattern matching.
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EVcouplings
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a tool to predict protein structure, function, and mutations using evolutionary sequence covariation.
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FAMSA
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(Fast and Accurate Multiple Sequence Aligner) implements an algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM).
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HHsuite
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an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
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HMMER
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is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
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MAFFT
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a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences).
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OpenMS
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OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software.
Keywords:
Proteomics
Proteomics
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Percolator
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semi-supervised learning for peptide identification from shotgun proteomics datasets.
Keywords:
Proteomics
Proteomics
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