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Supported Applications

Cellpose

  • Description

    Cellpose-SAM: cell and nucleus segmentation with superhuman generalization. It can be optimized for your own data, applied in 3D, works on images with shot noise, (an)isotropic blur, undersampling, contrast inversions, regardless of channel order and object sizes.

  • Usage

    To list all executables provided by Cellpose, run: $ biogrids-list cellpose Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cellpose Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Pachitariu, M. Rariden, and C. Stringer. 2025. Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.


    • *Full citation information available through

  • Keywords

    Visualization

  • Default Versions

    Linux 64:  4.0.4 (3.4 GB)
    OS X INTEL:  4.0.4 (3.3 GB)

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