Supported Applications
HMMER
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Description
is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
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Usage
To list all executables provided by HMMER, run:$ biogrids-list hmmer -
Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install hmmerAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
S. R. Eddy. 2011. Accelerated Profile HMM Searches. PLoS Comput Biol. 7(10): e1002195.
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*Full citation information available through
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Citation Note
Please cite the website, hmmer.org, and the version of the software you used.
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Keywords
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Default Versions
Linux 64: 3.3.2 (40.4 MB)
OS X INTEL: 3.3.2 (41.7 MB) -
Other Versions
Linux 64:
3.2.1 (13.5 MB) -
OS X INTEL:
3.2.1 (14.5 MB)
Developers
Sean R Eddy