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Supported Applications


  • Description

    is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

  • Usage

    To list all executables provided by HMMER, run: $ biogrids-list hmmer Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hmmer Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    S. R. Eddy. 2011. Accelerated Profile HMM Searches. PLoS Comput Biol. 7(10): e1002195.

    • *Full citation information available through

  • Citation Note

    Please cite the website, hmmer.org, and the version of the software you used.

  • Keywords

    Sequence Alignment Analysis

  • Default Versions

    Linux 64:  3.3.2 (40.4 MB)
    OS X INTEL:  3.3.2 (41.7 MB)

  • Other Versions

      Linux 64:

      3.2.1 (13.5 MB)
    • OS X INTEL:

      3.2.1 (14.5 MB)
  • Developers

    Sean R Eddy