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SECIMTools

  • Description

    a suite of tools for processing of metabolomics data.

  • Usage

    To list all executables provided by SECIMTools, run: $ biogrids-list secimtools Copy to clipboard

  • Usage Notes

    BioGrids SECIMTools provides a bundled python: python.secimtools

    and the following python scripts which can be called directly as executables:

    anova_fixed.py bland_altman_plot.py blank_feature_filtering_flags.py coefficient_variation_flags.py compare_flags.py compound_identification.py data_normalization_and_rescaling.py distribution_features.py distribution_samples.py hierarchical_clustering_heatmap.py imputation.py kruskal_wallis.py lasso_enet_var_select.py linear_discriminant_analysis.py log_and_glog_transformation.py magnitude_difference_flags.py mahalanobis_distance.py merge_flags.py modify_design_file.py modulated_modularity_clustering.py multiple_testing_adjustment.py mzrt_match.py partial_least_squares.py principal_component_analysis.py random_forest.py remove_selected_features_samples.py remove_user_specified_row_col.py retention_time_flags.py run_order_regression.py scatter_plot_2D.py scatter_plot_3D.py standardized_euclidean_distance.py subset_data.py summarize_flags.py svm_classifier.py threshold_based_flags.py ttest.py ttest_perm.py ttest_single_group.py

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install secimtools Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the website: https://github.com/secimTools/SECIMTools
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