Apr 30 2021
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SvABA
Structural variation and indel analysis by assembly.
Updated versions:
1.1.0 | Linux 64
1.1.0 | OS X INTEL
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Apr 30 2021
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Scallop
Scallop is an accurate reference-based transcript assembler.
Updated versions:
0.10.5 | Linux 64
0.10.5 | OS X INTEL
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Apr 28 2021
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LDSC
a command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores.
Updated versions:
1.0.1 | OS X INTEL
1.0.1 | Linux 64
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Apr 28 2021
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PyTorch
an open source deep learning platform that provides a seamless path from research prototyping to production deployment.
Updated versions:
1.6.0 | Linux 64
1.8.1 | Linux 64
1.7.0 | Linux 64
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Apr 27 2021
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PEER
a collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods.
Updated versions:
1.0 | Linux 64
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Apr 22 2021
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
11.2 | Linux 64
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Apr 19 2021
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PyMOL Open Source
open source version of the widely used molecular visualization package developed by Warren DeLano.
Updated versions:
2.4.0 | OS X INTEL
2.4.0 | Linux 64
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Apr 19 2021
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TelSeq
a software that estimates telomere length from whole genome sequencing data (BAMs).
Updated versions:
0.0.2 | OS X INTEL
0.0.2 | Linux 64
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Apr 19 2021
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assembly-stats
Get assembly statistics from FASTA and FASTQ files.
Updated versions:
1.0.1 | Linux 64
1.0.1 | OS X INTEL
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Apr 19 2021
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medaka
a tool to create consensus sequences and variant calls from nanopore sequencing data.
Updated versions:
1.0.3 | OS X INTEL
1.3.2 | Linux 64
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Apr 17 2021
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Hopla
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file, eventually generating interactive visualizations.
Updated versions:
0.2.1 | OS X INTEL
0.2.1 | Linux 64
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Apr 17 2021
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csvtk
a set of tools for manipulation of CSV/TSV files. It is convenient for rapid data investigation and integration into analysis pipelines.
Updated versions:
0.23.0 | Linux 64
0.23.0 | OS X INTEL
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Apr 16 2021
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STAR-Fusion
a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT), STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.
Updated versions:
1.10.0 | OS X INTEL
1.10.0 | Linux 64
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Apr 15 2021
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Fast Data Transfer - FDT
an application for Efficient Data Transfers which is capable of reading and writing at disk speed over wide area networks (with standard TCP). It is written in Java, runs an all major platforms and it is easy to use.
Updated versions:
0.25.1 | Linux 64
0.24.0 | Linux 64
0.25.1 | OS X INTEL
0.24.0 | OS X INTEL
0.26.3 | Linux 64
0.26.3 | OS X INTEL
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Apr 15 2021
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SAMtools
(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.
Updated versions:
1.12 | Linux 64
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Apr 13 2021
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MAPS
MAPS (Model-based Analysis of PLAC-Seq data) pipeline is a a set of multiple scripts used to analyze PLAC-Seq and HiChIP data.
Updated versions:
03052021 | Linux 64
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Apr 12 2021
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NanoPlot
Plotting tool for long read sequencing data and alignments.
Updated versions:
1.35.5 | Linux 64
1.35.5 | OS X INTEL
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