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STAR-Fusion

  • Description

    a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT), STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.

  • Usage

    To list all executables provided by STAR-Fusion, run: $ biogrids-list star-fusion Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install star-fusion Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    B. J. Haas, A. Dobin, B. Li, N. Stransky, N. Pochet, and A. Regev. 2019. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods. Genome Biol. 20(1): 213.


    • *Full citation information available through

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