Jun 29 2020
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OpenMPI
an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able to combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available.
Updated versions:
3.1.6 | Linux 64
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Jun 24 2020
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HiCExplorer
is a set of programs to process, normalize, analyze and visualize Hi-C and cHi-C data.
Updated versions:
3.4.3 | OS X INTEL
3.4.3 | Linux 64
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Jun 24 2020
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GATK
(Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any size with a primary focus on variant discovery, genotyping, and data quality assurance.
Updated versions:
3.8.1.0 | OS X INTEL
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Jun 24 2020
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Canvas
a tool for calling copy number variants (CNVs) from human DNA sequencing data.
Updated versions:
1.40.0.1613 | Linux 64
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Jun 24 2020
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SRA Toolkit
(Sequence Read Archive Toolkit) a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Updated versions:
2.10.7 | OS X INTEL
2.10.7 | Linux 64
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Jun 24 2020
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Luna
is an open-source C/C++ software package for manipulating and analyzing polysomnographic recordings, with a focus on the sleep EEG.
Updated versions:
0.22 | OS X INTEL
0.22 | Linux 64
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Jun 23 2020
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OpenMPI
an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able to combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available.
Updated versions:
3.1.6 | OS X INTEL
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Jun 23 2020
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Tig
is an ncurses-based text-mode interface for git.
Updated versions:
2.5.1 | Linux 64
2.5.1 | OS X INTEL
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Jun 23 2020
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htop
is an interactive process viewer.
Updated versions:
2.2.0 | Linux 64
2.2.0 | OS X INTEL
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Jun 23 2020
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dcm2niix
is a designed to convert neuroimaging data from the DICOM format to the NIfTI format.
Updated versions:
1.0.20200331 | Linux 64
1.0.20200331 | OS X INTEL
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Jun 22 2020
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BCFtools
a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
Updated versions:
1.10.2 | Linux 64
1.10.2 | OS X INTEL
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Jun 22 2020
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prottest3
is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand. ProtTest makes this selection by finding the model in the candidate list with the smallest Akaike Information Criterion (AIC), Bayesian Information Criterion (BIC) score or Decision Theory Criterion (DT).
Updated versions:
3.4.2 | Linux 64
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Jun 15 2020
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
9.2.148 | Linux 64
9.1.85 | Linux 64
9.0.176 | Linux 64
8.0.61 | Linux 64
8.0.44 | Linux 64
7.5.18 | Linux 64
10.2.89 | Linux 64
10.1.105 | Linux 64
10.0.130 | Linux 64
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Jun 12 2020
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OpenMPI
an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able to combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available.
Updated versions:
3.1.6_slurm-20.02.03 | Linux 64
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Jun 12 2020
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intervene
is a tool for intersection and visualization of multiple genomic region and gene sets (or lists of items).
Updated versions:
0.6.4 | OS X INTEL
0.6.4 | Linux 64
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Jun 11 2020
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FastQTL
a fast, flexible, user-friendly, cluster-friendly QTL mapper.
Updated versions:
2.0 | OS X INTEL
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Jun 10 2020
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
9.2.88 | Linux 64
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Jun 05 2020
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LUMPY
a probabilistic framework for structural variant discovery.
Updated versions:
0.2.13 | OS X INTEL
0.2.13 | Linux 64
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Jun 05 2020
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DataLad
provides joint management of analysis code and data. This enables you to comprehensively track the exact state of any analysis inputs that produced your results — across the entire lifetime of a project, and across multiple datasets.
Updated versions:
0.12.6 | OS X INTEL
0.12.6 | Linux 64
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Jun 04 2020
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vg
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
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nodes, which are labeled by sequences and ids
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edges, which connect two nodes via either of their respective ends
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paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts)
as walks through nodes connected by edges
Updated versions:
1.24.0 | Linux 64
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