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Supported Applications

HiCExplorer

  • Description

    is a set of programs to process, normalize, analyze and visualize Hi-C and cHi-C data.

  • Usage

    To list all executables provided by HiCExplorer, run: $ biogrids-list hicexplorer Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hicexplorer Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Wolff, L. Rabbani, R. Gilsbach, and e. al.. 2020. Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. Nucleic Acids Res..


    • *Full citation information available through

  • Keywords

    Hi-C

  • Default Versions

    Linux 64:  3.7.3 (1.4 GB)
    OS X INTEL:  3.7.3 (1.2 GB)

  • Other Versions

      Linux 64:

      3.4.3 (1.0 GB) , 3.6 (1.7 GB) , 3.7.2 (1013.2 MB)

    • OS X INTEL:

      3.4.3 (494.8 MB) , 3.6 (1.5 GB) , 3.7.2 (894.6 MB)
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