Nov 30 2023
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HiCExplorer
is a set of programs to process, normalize, analyze and visualize Hi-C and cHi-C data.
Updated versions:
3.6 | Linux 64
3.6 | OS X INTEL
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Nov 28 2023
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3D Slicer
is a free and open-source platform for analyzing and understanding medical image data.
Updated versions:
5.6.0 | OS X INTEL
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Nov 22 2023
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bids-validator
Brain Imaging Data Structure (BIDS) validator.
Updated versions:
1.13.1 | Linux 64
1.13.1 | OS X INTEL
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Nov 22 2023
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origami
a pipeline for processing and calling high-confidence chromatin loops associated with the ChIPped factor.
Updated versions:
1.1 | Linux 64
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Nov 22 2023
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3D Slicer
is a free and open-source platform for analyzing and understanding medical image data.
Updated versions:
5.4.0 | Linux 64
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Nov 21 2023
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whitematteranalysis
WhiteMatterAnalysis (WMA) provides fiber clustering and tractography analysis tools.
Updated versions:
0.3.0 | Linux 64
0.3.0 | OS X INTEL
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Nov 21 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.1 | Linux 64
12.1.1 | Linux 64
11.8 | Linux 64
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Nov 21 2023
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hichip-peaks
A package that can be used to find enriched peak regions from HiChIP datasets that can then be used as an input to available loop calling tools or to do differential peak analysis.
Updated versions:
0.1.2 | Linux 64
0.1.2 | OS X INTEL
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Nov 17 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.2.2 | Linux 64
12.2 | Linux 64
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Nov 17 2023
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R
a free software environment for statistical computing and graphics.
Updated versions:
4.2.1 | Linux 64
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Nov 15 2023
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Julia
a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.
Updated versions:
1.9.3 | Linux 64
1.9.3 | OS X INTEL
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Nov 14 2023
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mmquant
RNA-Seq quantification tool, with special handling on multi-mapping reads.
Updated versions:
1.0.7 | Linux 64
1.0.7 | OS X INTEL
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Nov 07 2023
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scVelo
is a scalable toolkit for RNA velocity analysis in single cells.
Updated versions:
0.2.5 | OS X INTEL
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