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Supported Applications

scVelo

  • Description

    is a scalable toolkit for RNA velocity analysis in single cells.

  • Usage

    To list all executables provided by scVelo, run: $ biogrids-list scvelo Copy to clipboard

  • Usage Notes

    BioGrids scVelo provides the following callable programs:

    python.scvelo

    jupyter.scvelo

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install scvelo Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. L. Manno, R. Soldatov, A. Zeisel, E. Braun, H. Hochgerner, Petukhov V, K. Lidschreiber, M. E. Kastriti, P. Lönnerberg, A. Furlan, J. Fan, L. E. Borm, Z. Liu, D. van Bruggen, J. Guo, X. He, R. Barker, E. Sundström, G. Castelo-Branco, P. Cramer, Adameyko I, S. Linnarsson, and P. V. Kharchenko. 2018. RNA velocity of single cells. Nature. 560(7719): 494-498.


    • *Full citation information available through

  • Keywords

    RNA-Seq Analysis

  • Default Versions

    Linux 64:  0.2.5 (3.1 GB)
    OS X INTEL:  0.2.5 (2.5 GB)

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