Jul 27 2023
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MUSCLE
(multiple sequence comparison by log-expectation) a public domain multiple alignment software for protein and nucleotide sequences.
Updated versions:
5.1 | Linux 64
5.0.1428 | Linux 64
5.1 | OS X INTEL
5.0.1428 | OS X INTEL
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Jul 19 2023
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tigmint
Correct misassemblies using linked or long reads
Updated versions:
1.2.10 | OS X INTEL
1.2.10 | Linux 64
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Jul 18 2023
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GoldRush
memory-efficient de novo assembly of long reads
Updated versions:
1.0.3 | OS X INTEL
1.0.3 | Linux 64
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Jul 17 2023
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dammit
simple de novo transcriptome annotator
Updated versions:
1.2 | OS X INTEL
1.2 | Linux 64
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Jul 14 2023
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MashMap
A fast approximate aligner for long DNA sequences.
Updated versions:
3.0.5 | Linux 64
3.0.1 | OS X INTEL
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Jul 13 2023
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Kraken 2
a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
Updated versions:
2.1.3 | Linux 64
2.1.3 | OS X INTEL
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Jul 10 2023
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R
a free software environment for statistical computing and graphics.
Updated versions:
4.1 | OS X INTEL
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Jul 07 2023
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kallisto
a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
Updated versions:
0.50.0 | Linux 64
0.50.0 | OS X INTEL
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Jul 05 2023
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gappa
Genesis Applications for Phylogenetic Placement Analysis
Updated versions:
0.8.4 | Linux 64
0.8.4 | OS X INTEL
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