Supported Applications


  • Description

    (multiple sequence comparison by log-expectation) a public domain multiple alignment software for protein and nucleotide sequences.

  • Primary Citation*

    R. C. Edgar. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5): 1792-1797.

    • *Full citation information available through

  • Default Versions

    Linux 64:  3.8.31
    OS X INTEL:  3.8.31

  • Other Available Versions

      OS X INTEL:

  • Developers

    Robert Edgar.