Software Updates

CellRank

CellRank is a modular framework to study cellular dynamics based on Markov state modeling of multi-view single-cell data.

CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and easy to use. In the backend, it is powered by pyGPCCA (Reuter et al. (2018)).

OpenFold

a trainable, memory-efficient, and GPU-friendly PyTorch reproduction of DeepMind's AlphaFold 2.

Macrel

(Meta)genomic AMP Classification and Retrieval Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.