Software Updates

BCFtools

a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

R

a free software environment for statistical computing and graphics.

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Xenium Ranger

provides flexible off-instrument reanalysis of Xenium In Situ data, including relabeling transcripts, resegmenting cells, importing custom segmentation data, and renaming datasets.