Supported Applications

wot

  • Description

    a software package for analyzing snapshots of developmental processes in scRNA-seq data.

  • Usage Notes

    WOT within the BioGrids environment provides the following commands:

    wot

    python.wot

    jupyter.wot

    jupyter-lab.wot

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install wot Copy to clipboard
  • Primary Citation*

    G. Schiebinger, J. Shu, M. Tabaka, B. Cleary, Subramanian V, A. Solomon, J. Gould, S. Liu, S. Lin, P. Berube, L. Lee, J. Chen, J. Brumbaugh, P. Rigollet, K. Hochedlinger, R. Jaenisch, A. Regev, and E. S. Lander. 2019. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. Cell. 176(4): 928-943.e22.


    • *Full citation information available through

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