WASP is a suite of tools for unbiased allele-specific read mapping and discovery of molecular QTLs
WASPQTL is a set of scripts implementing workflows. The scripts require a variety of other tools.
Most scripts will have to be edited to include specific project and data directories.
In order to edit the files you must copy them out of the BioGrids /programs tree:
to some local space.
In the BioGrids environment, be sure to explicitly set the version of python to 3.6.5:
and R to version 3.6.2:
other tools like samtools and bowtie2 made also need specific versions.
B. van de Geijn, G. McVicker, Y. Gilad, and P. JK.. 2015. WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nat Methods. 12(11): 1061-1063.
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