Supported Applications
VeryFastTree
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Description
VeryFastTree is a new tool designed for efficient phylogenetic tree inference, specifically tailored to handle massive taxonomic datasets. It is a highly-tuned implementation based on the FastTree-2 tool that takes advantage of parallelization and vectorization strategies to speed up the inference of phylogenies for huge alignments.
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Usage
To list all executables provided by VeryFastTree, run:$ biogrids-list veryfasttree
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install veryfasttree
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
C. Piñeiro, J. M. Abuín, and J. C. Pichel. 2020. Very Fast Tree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies. Bioinformatics (Oxford, England). 36(17): 4658-4659.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  4.0.4 (21.9 MB)
OS X INTEL:  4.0.4 (7.4 MB)