Supported Applications
VarScan
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Description
a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments.
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install varscan
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
D. C. Koboldt, Q. Zhang, D. E. Larson, D. Shen, M. D. McLellan, L. Lin, C. A. Miller, E. R. Mardis, L. Ding, and R. K. Wilson. 2012. VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research. 22(3): 568-576.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  2.4.4 (115.8 KB)
OS X INTEL:  2.4.4 (115.7 KB) -
Other Versions
Linux 64:
2.3.9 (111.2 KB) , 2.4.2 (114.5 KB) -
OS X INTEL:
2.3.9 (111.0 KB) , 2.4.2 (114.3 KB)
Developers
Daniel C Koboldt