Supported Applications

VarScan

Description

a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments.
Usage Notes

Note: VarScan is only available to non-profit users of BioGrids. Commercial users can license this tool through the Office of Technology Management at Washington University in St. Louis.
License notes

Restriction: available to non-profit users only. See technical notes for additional information on for-profit user licensing.
Primary Citation*

D. C. Koboldt, Q. Zhang, D. E. Larson, D. Shen, M. D. McLellan, L. Lin, C. A. Miller, E. R. Mardis, L. Ding, and R. K. Wilson. 2012. VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research. 22(3): 568-576.
- *Full citation information available through