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Trinotate

  • Description

    a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms.

  • Usage

    To list all executables provided by Trinotate, run: $ biogrids-list trinotate Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install trinotate Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    D. M. Bryant, K. Johnson, T. DiTommaso, T. Tickle, M. B. Couger, D. Payzin-Dogru, T. J. Lee, N. D. Leigh, T. H. Kuo, F. G. Davis, J. Bateman, S. Bryant, A. R. Guzikowski, S. L. Tsai, S. Coyne, W. W. Ye, R. M. Freeman Jr., L. Peshkin, C. J. Tabin, A. Regev, B. J. Haas, and J. L. Whited. 2017. A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors. Cell reports. 18(3): 762-776.


    • *Full citation information available through

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