Supported Applications

Trinity

Description

a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
Installation
Use the following command to install this title with the CLI client: $ biogrids-cli install trinity
Citation Note

A full list of references including Trinity, RSEM, and additional tools leveraged by Trinity can be obtained by running Trinity --cite.

Keywords

De Novo Transcriptome Assembly, High-throughput sequencing, RNA-Sequencing
Default Versions

Linux 64: 2.5.1
OS X INTEL: 2.6.6
Other Versions
Developers

Alexie Papanicolaou, Aviv Regev, Brian Haas, Manfred Grabherr, Moran Yassour, Nir Friedman, Richard LeDuc, Robert Henschel