Supported Applications
Trinity
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Description
a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install trinity
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Citation Note
A full list of references including Trinity, RSEM, and additional tools leveraged by Trinity can be obtained by running Trinity --cite.
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Keywords
De Novo Transcriptome Assembly, High-throughput sequencing, RNA-Sequencing
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Default Versions
Linux 64:  2.5.1
OS X INTEL:  2.6.6 -
Other Versions
Linux 64:
r20140717, 2.6.6, 2.0.2
Developers
Alexie Papanicolaou, Aviv Regev, Brian Haas, Manfred Grabherr, Moran Yassour, Nir Friedman, Richard LeDuc, Robert Henschel