Supported Applications
Trinity
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Description
a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
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Citation Note
A full list of references including Trinity, RSEM, and additional tools leveraged by Trinity can be obtained by running Trinity --cite.
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Keywords
De Novo Transcriptome Assembly, High-throughput sequencing, RNA-Sequencing
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Default Versions
Linux 64: 2.6.6
OS X INTEL: 2.6.6 -
Other Available Versions
Linux 64:
r20140717, 2.5.1, 2.0.2
Developers
Nir Friedman, Manfred Grabherr, Brian Haas, Robert Henschel, Richard LeDuc, Alexie Papanicolaou, Aviv Regev, Moran Yassour.