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Trinity

  • Description

    a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.

  • Usage

    To list all executables provided by Trinity, run: $ biogrids-list trinity Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install trinity Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    A full list of references including Trinity, RSEM, and additional tools leveraged by Trinity can be obtained by running Trinity --cite.

  • Keywords

    De Novo Transcriptome Assembly, High-throughput sequencing, RNA-Sequencing

  • Default Versions

    Linux 64:  2.5.1 (174.5 MB)
    OS X INTEL:  2.6.6 (131.6 MB)

  • Other Versions

      Linux 64:

      2.0.2 (374.6 MB) , 2.6.6 (148.4 MB) , r20140717 (348.1 MB)

    • OS X INTEL:

  • Developers

    Alexie Papanicolaou, Aviv Regev, Brian Haas, Manfred Grabherr, Moran Yassour, Nir Friedman, Richard LeDuc, Robert Henschel

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