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  • Description

    quantifies mRNA abundance directly from the alignments by parsing BAM files. The input parameters are the same GTF files used to generate the alignments, and one or multiple input BAM file(s) containing either single-end or paired-end sequencing reads. The TPMCalculator output is comprised of four files per sample reporting the TPM values and raw read counts for genes, transcripts, exons and introns respectively.

  • Usage

    To list all executables provided by TPMCalculator, run: $ biogrids-list tpmcalculator Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install tpmcalculator Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Keywords

    RNA-Seq Analysis

  • Default Versions

    Linux 64:  0.0.3 (19.4 MB)
    OS X INTEL:  0.0.3 (1.8 MB)

  • Other Versions

      Linux 64:

      0.0.2 (8.5 MB)
    • OS X INTEL:

      0.0.2 (2.3 MB)