Supported Applications
TopHat
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Description
a fast splice junction mapper for RNA-Seq reads that aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
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Usage
To list all executables provided by TopHat, run:$ biogrids-list tophat -
Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install tophatAvailable operating systems: Linux 64, OS X INTEL
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Keywords
High-throughput sequencing, RNA-Sequencing, Spliced Read Alignment
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Default Versions
Linux 64: 2.1.1 (41.3 MB)
OS X INTEL: 2.1.1 (5.3 MB) -
Other Versions
Linux 64:
2.0.11 (41.4 MB) -
OS X INTEL:
Developers
Cole Trapnell, Daehwan Kim, Steven Salzberg