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Supported Applications

TOBIAS

  • Description

    (Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal) a collection of command-line bioinformatics tools for performing footprinting analysis on ATAC-seq data.

  • Usage

    To list all executables provided by TOBIAS, run: $ biogrids-list tobias Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install tobias Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Bentsen, P. Goymann, H. Schultheis, K. Klee, A. Petrova, R. Wiegandt, A. Fust, J. Preussner, C. Kuenne, T. Braun, J. Kim, and M. Looso. 2020. ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation. Nat Commun. 11(1): 4267.


    • *Full citation information available through

  • Keywords

    ATAC-Seq

  • Default Versions

    Linux 64:  0.12.10 (1.6 GB)
    OS X INTEL:  0.12.10 (850.2 MB)

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