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STREAM

  • Description

    (Single-cell Trajectories Reconstruction, Exploration And Mapping) is an interactive computational pipeline for reconstructing complex celluar developmental trajectories from sc-qPCR, scRNA-seq or scATAC-seq data.

  • Usage

    To list all executables provided by STREAM, run: $ biogrids-list stream Copy to clipboard

  • Usage Notes

    BioGrids STREAM provides the following executables:

    jupyter.stream

    python.stream

    stream_run_test

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install stream Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    H. Chen, L. Albergante, J. Y. Hsu, C. A. Lareau, G. L. Bosco, J. Guan, S. Zhou, A. N. Gorban, D. E. Bauer, M. J. Aryee, D. M. Langenau, A. Zinovyev, J. D. Buenrostro, G. C. Yuan, and L. Pinello. 2019. Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM. Nature communications. 10(1): 1903.


    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  1.0 (1.9 GB)
    OS X INTEL:  1.0 (1.7 GB)

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