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Starcode

  • Description

    Starcode is a DNA sequence clustering software. Starcode clustering is based on all pairs search within a specified Levenshtein distance (allowing insertions and deletions), followed by a clustering algorithm: Message Passing, Spheres or Connected Components. Typically, a file containing a set of DNA sequences is passed as input, jointly with the desired clustering distance and algorihtm. Starcode returns the canonical sequence of the cluster, the cluster size, the set of different sequences that compose the cluster and the input line numbers of the cluster components.

  • Usage

    To list all executables provided by Starcode, run: $ biogrids-list starcode Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install starcode Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    E. Zorita, P. Cuscó, and F. GJ.. 2015. Starcode: sequence clustering based on all-pairs search. Bioinformatics. 31(12): 1913-1919.


    • *Full citation information available through

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