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Supported Applications

staramr

  • Description

    Scan genome contigs against the ResFinder and PointFinder databases

  • Usage

    To list all executables provided by staramr, run: $ biogrids-list staramr Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install staramr Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. Bharat, A. Petkau, B. P. Avery, J. C. Chen, J. P. Folster, C. A. Carson, A. Kearney, C. Nadon, P. Mabon, J. Thiessen, D. C. Alexander, Allen V, S. E. Bailey, S. Bekal, G. J. German, D. Haldane, L. Hoang, L. Chui, J. Minion, G. Zahariadis, G. V. Domselaar, R. J. Reid-Smith, and M. R. Mulvey. 2022. Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in <i>Salmonella enterica</i> in Canada Using Staramr. Microorganisms. 10(2).


    • *Full citation information available through

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