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Supported Applications

SpliceMap

  • Description

    is a de novo splice junction discovery and alignment tool. It offers high sensitivity and support for arbitrary RNA-seq read lengths.

  • Usage

    To list all executables provided by SpliceMap, run: $ biogrids-list splicemap Copy to clipboard

  • Usage Notes

    SpliceMap includes a version of bowtie.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install splicemap Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    K. F. Au, H. Jiang, L. Lin, Y. Xing, and W. WH.. 2010. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res.. 38(14): 4570-4578.


    • *Full citation information available through

  • Keywords

    RNA-Seq Analysis

  • Default Versions

    Linux 64:  3.3.5.2 (3.1 MB)
    OS X INTEL:  3.3.5.2 (3.5 MB)

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