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SpliceAI

  • Description

    A deep learning-based tool to identify splice variants.

  • Usage

    To list all executables provided by SpliceAI, run: $ biogrids-list spliceai Copy to clipboard

  • Usage Notes

    Note that SpliceAI models require a license for commercial use.

    Models are not included with the BioGrids installation. Users can download the models from github:

    https://github.com/Illumina/SpliceAI

    The model directory under spliceai contains a link pointing to /programs/local/spliceai/1.3.1/models.

    Downloaded models should be installed here:

    $ ls -l /programs//local/spliceai/1.3.1/models/

    total 14730

    -rw-r--r--. 1 sbgrid sbgrid 3131720 Mar 15 08:09 spliceai1.h5

    -rw-r--r--. 1 sbgrid sbgrid 3131720 Mar 15 08:09 spliceai2.h5

    -rw-r--r--. 1 sbgrid sbgrid 3131720 Mar 15 08:09 spliceai3.h5

    -rw-r--r--. 1 sbgrid sbgrid 3131720 Mar 15 08:09 spliceai4.h5

    -rw-r--r--. 1 sbgrid sbgrid 3131720 Mar 15 08:09 spliceai5.h5

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install spliceai Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the website:


    https://github.com/Illumina/SpliceAI

  • Keywords

    Genome Annotation

  • Default Versions

    Linux 64:  1.3.1 (4.8 GB)
    OS X INTEL:  1.3.1 (1.1 GB)

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