Supported Applications

SPAdes

  • Description

    (St. Petersburg genome assembler) a genome assembly algorithm designed for single-cell and multi-cell bacterial data sets.

  • Primary Citation*

    S. Nurk, A. Bankevich, D. Antipov, A. Gurevich, A. Korobeynikov, A. Lapidus, A. Prjibelsky, A. Pyshkin, A. Sirotkin, Y. Sirotkin, R. Stepanauskas, J. McLean, R. Lasken, S. R. Clingenpeel, T. Woyke, G. Tesler, M. A. Alekseyev, and P. A. Pevzner. 2013. Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Research in Computational Molecular Biology: 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013. Proceedings. 7821: 158-170.


    • *Full citation information available through

  • Keywords

    High-throughput sequencing, scDNA-Seq Analysis, Single-Cell Assemblers

  • Default Versions

    Linux 64:  3.11.1
    OS X INTEL:  3.11.1

  • Other Available Versions

      Linux 64:

      3.9.0-kmer256, 3.9.0, 3.7.1-kmer256, 3.7.1
    • OS X INTEL:

      3.9.0, 3.7.1
  • Developers

    Max Alekseyev, Dmitry Antipov, Anton Bankevich, Sergey Nurk, Pavel Pevzner, Andrey Prjibelski, Yana Safonova.

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