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SPAdes

  • Description

    (St. Petersburg genome assembler) a genome assembly algorithm designed for single-cell and multi-cell bacterial data sets.

  • Usage

    To list all executables provided by SPAdes, run: $ biogrids-list spades Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install spades Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. Prjibelski, D. Antipov, D. Meleshko, A. Lapidus, and A. Korobeynikov. 2020. Using SPAdes De Novo Assembler. Current Protocols in Bioinformatics. 70(1): e102.


    • *Full citation information available through

  • Citation Note

    Also, please see the SPAdes GitHub page for additional citation recommendations.

  • Keywords

    High-throughput sequencing, scDNA-Seq Analysis, Single-Cell Assemblers

  • Default Versions

    Linux 64:  3.15.2 (69.2 MB)
    OS X INTEL:  3.15.2 (81.1 MB)

  • Other Versions

      Linux 64:

      3.11.1 (23.7 MB) , 3.13.0 (35.1 MB) , 3.13.1 (34.8 MB) , 3.7.1 (26.3 MB) , 3.7.1-kmer256 (24.4 MB) , 3.9.0 (24.0 MB) , 3.9.0-kmer256 (22.8 MB)

    • OS X INTEL:

      3.11.1 (28.3 MB) , 3.13.0 (34.8 MB) , 3.13.1 (40.1 MB) , 3.7.1 (26.1 MB) , 3.9.0 (26.1 MB)

  • Developers

    Andrey D Prjibelski, Anton Bankevich, Dmitry Antipov, Max A Alekseyev, Pavel A Pevzner, Sergey Nurk, Yana Safonova

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