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SortMeRNA

  • Description

    SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS reads in metatranscriptomic and metagenomic data. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering ribosomal RNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).

  • Usage

    To list all executables provided by SortMeRNA, run: $ biogrids-list sortmerna Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install sortmerna Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    E. Kopylova, L. Noé, and T. H.. 2012. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics. 28(24): 3211-3217.


    • *Full citation information available through

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