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Supported Applications


  • Description

    The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

  • Usage

    To list all executables provided by Snakemake, run: $ biogrids-list snakemake Copy to clipboard
  • Usage Notes

    Snakemake requires python 3.6.5. When you install Snakemake through BioGrids you will also install python 3.6.5. This version of python will be available in the BioGrids environment but will not be set as the default. You can configure your default python versio using the .sbgrid.conf file. See: https://biogrids.org/wiki/versions

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install snakemake Copy to clipboard Available operating systems: Linux 64, OS X INTEL