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smoothxg

  • Description

    Local reconstruction of variation graphs using partial order alignment. Pangenome graphs built from raw sets of alignments may have complex local structures generated by common patterns of genome variation. smoothxg can be used to extract the consensus pangenome graph by applying the heaviest bundle algorithm to each chain.

  • Usage

    To list all executables provided by smoothxg, run: $ biogrids-list smoothxg Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install smoothxg Copy to clipboard Available operating systems: Linux 64

  • Citation Note

    Please cite the website:


    https://github.com/pangenome/smoothxg

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