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SeqVerify

  • Description

    SeqVerify is a Python-based command line tool for analysis of whole genome sequencing data for gene-editing verification. It performs insertion site detection, copy number variation (CNV) analysis through CNVPytor, bacterial contamination detection through KRAKEN2 and BRACKEN, and variant calling and filtering aided by SnpEff and SnpSift.

  • Usage

    To list all executables provided by SeqVerify, run: $ biogrids-list seqverify Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install seqverify Copy to clipboard Available operating systems: Linux 64

  • Citation Note

    Please cite the website:


    https://github.com/mpiersonsmela/SeqVerify

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