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  • Description

    Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing.

  • Usage

    To list all executables provided by SECAPR, run: $ biogrids-list secapr Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install secapr Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    T. Andermann, C. Á, A. Zizka, C. Bacon, and A. Antonelli. 2018. SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments. PeerJ. 6: e5175.

    • *Full citation information available through

  • Keywords


  • Default Versions

    Linux 64:  2.2.3 (1.7 GB)
    OS X INTEL:  2.2.3 (1.4 GB)