Supported Applications

SECAPR

  • Description

    Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install secapr Copy to clipboard
  • Primary Citation*

    T. Andermann, C. Á, A. Zizka, C. Bacon, and A. Antonelli. 2018. SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments. PeerJ. 6: e5175.


    • *Full citation information available through

  • Keywords

    Phylogenomics

  • Default Versions

    Linux 64:  2.2.3
    OS X INTEL:  2.2.3

Scroll