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samblaster

  • Description

    a fast, flexible program for marking duplicates in read-id grouped1 paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.

  • Usage

    To list all executables provided by samblaster, run: $ biogrids-list samblaster Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install samblaster Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. G. Faust and I. M. Hall. 2014. SAMBLASTER: fast duplicate marking and structural variant read extraction. Bioinformatics. 30(17): 2503-2505.


    • *Full citation information available through

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  0.1.24 (44.6 KB)
    OS X INTEL:  0.1.24 (36.5 KB)

  • Developers

    Greg Faust

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