Supported Applications


  • Description

    a fast, flexible program for marking duplicates in read-id grouped1 paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install samblaster Copy to clipboard
  • Primary Citation*

    G. G. Faust and I. M. Hall. 2014. SAMBLASTER: fast duplicate marking and structural variant read extraction. Bioinformatics. 30(17): 2503-2505.

    • *Full citation information available through