Supported Applications
Salmon
-
Description
a tool for quantifying the expression of transcripts using RNA-seq data. Salmon uses new algorithms to provide very quick, accurate expression estimates using little memory and performs inference using an expressive and realistic model of RNA-seq data that takes into account experimental attributes and biases commonly observed in real RNA-seq data.
-
Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install salmon
-
Primary Citation*
R. Patro, G. Duggal, M. I. Love, and R. A. I. &. C. Kingsford. 2017. Salmon provides fast and bias-aware quantification of transcript expression. Nature Methods. 14(4): 417-419.
-
*Full citation information available through
-
-
Keywords
-
Default Versions
Linux 64:  0.9.1
OS X INTEL:  0.9.1 -
Other Versions
Linux 64:
0.8.2
Developers
Carl Kingsford, Robert Patro