Supported Applications

RoseTTAFold

  • Description

    accurate prediction of protein structures and interactions using a 3-track network.

  • Usage Notes

    SBGrid/BioGrids RosettaFold uses an environment variable to specify the location of the requires databases:

    ROSETTAFOLD_DB_PATH

    If this variable is not set in the users environment before calling rosettafold it will default to:

    ROSETTAFOLD_DB_PATH=$SB_LOCAL/rosettafold
    

    which for most sites is /programs/local/rosettafold

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install rosettafold Copy to clipboard
  • Primary Citation*

    M. Baek, F. DiMaio, I. Anishchenko, J. Dauparas, S. Ovchinnikov, G. R. Lee, J. Wang, Q. Cong, L. N. Kinch, R. D. Schaeffer, C. Millán, H. Park, C. Adams, C. R. Glassman, A. DeGiovanni, J. H. Pereira, A. V. Rodrigues, A. A. van Dijk, A. C. Ebrecht, D. J. Opperman, T. Sagmeister, C. Buhlheller, T. Pavkov-Keller, M. K. Rathinaswamy, U. Dalwadi, C. K. Yip, J. E. Burke, K. C. Garcia, N. V. Grishin, P. D. Adams, R. J. Read, and D. Baker. 2021. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 373(6557): 871-876.


    • *Full citation information available through

Scroll