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Supported Applications

Roary

  • Description

    Takes annotated assemblies in GFF3 format and calculates the pan genome.

  • Usage

    To list all executables provided by Roary, run: $ biogrids-list roary Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install roary Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. J. Page, C. A. Cummins, M. Hunt, V. K. Wong, S. Reuter, M. T. Holden, M. Fookes, D. Falush, J. A. Keane, and J. Parkhill. 2015. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics (Oxford, England). 31(22): 3691-3.


    • *Full citation information available through

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